SELECTED PUBLICATIONS OF MARC W. ALLARD

Hang Yee WONGa,*, June S.W. TANGa, Bruce BUDOWLEb, Marc W. ALLARDc, Christopher K.C. SYNa, Wai Fun TAN-SIEWa, and Shui Tse CHOWa 2007. Announcement of Population Data Sequence polymorphism of the mitochondrial DNA hypervariable regions I and II in 205 Singapore Malays. Legal Medicine 9:33-37

Gundry R., M. W. Allard, D. Foran, T. Moretti, R. Honeycutt and M. Wilson 2007. Mitochondrial DNA analysis of the Domestic Dog: Control region variation within and between breeds. In press the Journal of Forensic Sciences.

Allard, M. W., M. Wilson, K. Monson and B. Budowle 2006. Control region sequences for Hispanic individuals in the SWGDAM forensic mtDNA data set. Journal of Forensic Science 51:566-573.

Stuart B. L., K. Dugan, M.W. Allard, M. Kearney. 2006. Perspective: Extraction of nuclear DNA from bone of skeletonized and fluid-preserved museum specimens. Systematics and Biodiversity 4(2):133-136.

Allard, M. W., M. Wilson, and B. Budowle 2005. Systematics as a Forensic science. Mcgraw-Hill Yearbook of science and technology, New York, Mcgraw-Hill Book Co.

Allard, M. W., D. Polanskey, K. Miller, M. Wilson, K. Monson and B. Budowle 2005. Characterization of human control region sequences of the African American SWGDAM forensic mtDNA data set. Forensic Science International, 148(2-3):169-179.

Budowle B, Polanskey D, Allard MW, Chakraborty R. 2004. Addressing the use of phylogenetics for identification of sequences in error in the SWGDAM mitochondrial DNA database. The Journal of Forensic Sciences, 49:1256-1261.

Wilson, M. and M. W. Allard 2004. Phylogenetic and mitochondrial DNA analysis in the forensic sciences. Forensic Science Reviews 16:37-62

M. O’Leary, M.W. Allard, M. J. Novacek, J. Meng, J. Gatesy. 2004. Building the Mammalian sector of the tree of life: Combining different data and a discussion of divergence times for Placental mammals. Pp. 490-516, In (J. Cracraft and M Donoghue, eds.) Assembling the tree of life. Oxford University Press, New York.

Allard, M. W., M. Wilson, K. Monson and B. Budowle 2004. Control region sequences for East Asian individuals in the SWGDAM forensic mtDNA data set. Legal Medicine 6:11-24.

Budowle B, Allard MW, Wilson MR, Chakraborty R. Forensic mitochondrial DNA: Applications, Debates and Foundations. Annual review of Genomics and Human Genetics, 2003;4:119-143. volume, New York.

Malia Jr., M. J., D. Lipscomb, and M. W. Allard. 2003. Effects of composite taxa in molecular supermatrices. Mol. Phylogenetics and Evol. 27(3):522-527.

Budowle B., M. R. Wilson, and M. W. Allard. 2002. Characterization of heteroplasmy and hypervariable sites in HVI: Critique of D’Eustachio’s interpretations. Forensic Science International. 130:68-70.

Wilson, M., M. W. Allard, K. Monson, K. Miller and B. Budowle 2002. Further discussion of the consistent treatment of length variants in the human mitochondrial DNA control region. In press Forensic Science Communications. 4(4): http://www.fbi.gov/hq/lab/fsc/backissu/oct2002/index.htm

Allard, M. W., M. Wilson, K. Miller, K. Monson and B. Budowle 2002. Characterization of the Caucasian haplogroups present in the SWGDAM forensic mtDNA data set for 1771 human control region sequences. Journal of Forensic Sciences 47:1215-23.

Malia Jr., M. J., R. M. Adkins, and M. W. Allard. 2002. Molecular support for Afrotheria and the polyphyly of Lipotyphla based on analyses of the growth hormone receptor gene. Molecular Phylogenetics and Evolution. 24:91-101.

Wilson, M., M. W. Allard, K. Monson, K. Miller and B. Budowle 2002. Recommendations for consistent treatment of length variants in the human mitochondrial DNA control region. Forensic Sciences International. 129:35-42

Budowle B., M. K. Wilson, and M. W. Allard. 2002. Critique of interpretation of high levels of heteroplasmy in the human mitochondrial DNA hypervariable region I from hair. Forensic Science International. 126:30-33.

Budowle B., C. L. Fisher, A. R. Isenberg, K. Monson, J.E.B. Stewart, M. R. Wilson, M. W. Allard and K. Miller 2002. HVI and HVII Mitochondrial DNA population data in Apache and Navajos. Internatl. J. Of Legal Med. 116:283-286.

Daly, M., D. L. Lipscomb, and M. W. Allard. 2002. A Simple Test: Evaluating Explanations For The Relative Simplicity Of The Edwardsiidae (Cnidaria: Anthozoa). Evolution 56:502-510.

Turano, F., G. R. Panta, M. W. Allard, and P. Van Berkum. 2001. The putative glutamate receptors from plants are related to two superfamilies of animal neurotransmitter receptors via distinct evolutionary mechanisms. Mol. Biol. And Evol. 18:108-111.

Shevchuk, N. and M. W. Allard. 2001. Sources of incongruence among mammalian mitochondrial sequences: COII, COIII, and ND6 genes are main contributors. Molecular Phylogenetics and Evol. 21:43-54.

Allard, M. W., S. D. Baker,G. Emerson, J. Ottenwalder, and C. W. Kilpatrick. 2001. Characterization of the mitochondrial control region in Solenodon paradoxus and the implications for biogeography, systematics, and conservation managment. Pp. 329-332 in C. A. Woods and F. Sergile (eds.). Biogeography of the West Indies: New Patterns and Perspectives. CRC Press LLC, New York.

Emerson, G., C. W. Kilpatrick, B. McNiff, J. Ottenwalder, and M. W., Allard. 1999. Phylogenetic relationships of the order Insectivora based on complete 12S rRNA sequences from mitochondria. Cladistics15:221-230. Special issue: Hennig XVI Symposium on Mammal Phylogeny. Guest editors: Marc W. Allard and Rodney L. Honeycutt.

Allard, M. W., R. L. Honeycutt, and M. J. Novacek. 1999. Introduction: Advances in higher level mammalian relationships. Cladistics 15:213-219. Special issue: Hennig XVI Symposium on Mammal Phylogeny. Guest editors: Marc W. Allard and Rodney L. Honeycutt.

Allard, M. W., J. S. Farris, and J. M. Carpenter. 1999. Congruence among mammalian mitochondrial genes. Cladistics 15:75-84.

Brown, E., M. W. Allard, and T. van der Zwet. 1998. Phylogenetic characterization of the eubacterial lcrD gene family: Molecular evolutionary aspects of pathogen-induced hypersensitivity in plants. Cladistics 14:45-62.

McNiff, B. and M. W., Allard. 1998. A Test of Archontan Monophyly and the phylogenetic utility of the mitochondrial gene 12S rRNA. American journal of Physical Anthropology. 107:225-241.

Young, D., M. W. Allard, J. A. Moreno, M. M. Miyamoto, C. R. Ruiz and R. A. PerezRivera. 1998. DNA fingerprint variation and reproductive fitness in the Plain Pigeon. Conservation Biology. 12:225-227

Young, D. and M. W. Allard. 1997. Conservation genetics of the Plain Pigeon (Columba inornata) in Puerto Rico and the Dominican Republic. Molecular Ecology. 6:877-879.

Allard, M. W., B. E. McNiff, and M. M. Miyamoto. 1996. Support for interordinal relationships with emphasis on Primates and their archontan relatives. Molecular Phylogenetics and Evolution, 5:78-88.

Allard, M. W. and J. Carpenter. 1996. On weighting and congruence. Cladistics. 12:183-198.

Allard, M.W., D. Young, and Y. Huyen. 1995. Detecting Dinosaur DNA. Science 268:1192.

Young, D., M. W. Allard, and Y. Huyen. 1995. Testing the validity of the cytochrome b sequence from Cretaceous period bone fragments as dinosaur DNA. Cladistics, 11:199-210.

Farris et al. 1995. (I am one of 30 coauthors). Explanation. Cladistics, 11:211-218.

Allard, M. W., M. M. Miyamoto, K. A. Bjorndal, A. B. Bolton, and B. W. Bowen. 1994. Support for natal homing in green turtles from mitochondrial DNA sequences. Copeia, 1:34-41.

Miyamoto M. M., M. W. Allard, R. Adkins, L. L. Janecek, and R. L. Honeycutt. 1994. A congruence test of reliability using linked mitochondrial DNA sequences. Systematic Biology, 43(2):236-249.

Nedbal, M., M. W. Allard, and R. L. Honeycutt. 1994. Molecular Systematics and interfamilial relationships among hystricognathid rodents determined from the 12S rRNA mitochondrial gene sequences. Molecular Phylogenetics and Evolution, 3:206-220.

Miyamoto, M. M., M. W. Allard, J. A. Moreno. 1994. Conservation genetics of the Plain Pigeon (Columba inornata) in Puerto Rico. Auk, 11:910-916.

Allard, M.W. 1994. An empirical example of parsimony behavior. Pp. 231-248. in. Models of Phylogeny Reconstruction. (R. W. Scotland, D, Siebert, and D. M. Williams, eds.), Clarendon Press, Oxford, The Systematics Assoc. Special Vol. No. 52.

The Huntington’s Disease Collaborative Research Group. 1993. (I am one of 58 coauthors). A novel gene containing a trinucleotide repeat that is expanded and unstable on Huntington’s disease chromosomes. Cell, 72:971-983.

Hillis, D. M., M. W. Allard, and M. M. Miyamoto. 1993. Analysis of DNA sequence data: Phylogenetic inference, the practical issues. in Molecular evolution: Producing the biochemical data (E.A. Zimmer, T.J. White, R.L. Cann, and A.C. Wilson, eds.), Methods. Enzymol., 224:456-487.

Allard, M.W., and R.L. Honeycutt. 1992. Nucleotide sequence variation in the mitochondrial 12S rRNA gene and the phylogeny of the African mole-rats (Rodentia: Bathyergidae). Mol. Biol. Evol. 9:27-40.

Wayne, R.K., N. Lehman, M.W. Allard, and R.L. Honeycutt. 1992. Mitochondrial DNA variability of the gray wolf: genetic consequences of population decline and habitat fragmentation. Conservation Biology, 6:559-569. Reprinted in compendium volume 1995. Genes, populations and species. Readings from Conservation Biology. (D. Ehrenfeld, eds.) Blackwell Science Inc. and the Society for Conservation Biology, Cambridge, MA.

Allard, M.W., M.M. Miyamoto, L. Jarecki, F. Kraus, and M.R. Tennant. 1992. Molecular systematics and evolution of the family Bovidae (order Artiodactyla) based on mitochondrial DNA gene sequences. Proc. Natl. Acad. Sciences, USA 89:3972-3976.

Allard, M. W. and M. M. Miyamoto. 1992. Testing phylogenetic approaches with empirical data as illustrated with the parsimony method. Mol. Biol. Evol. 9:778-786.

Ruvolo, M., T. Disotell, M.W. Allard, W. Brown, and R. L. Honeycutt. 1991. A resolution of the African hominoid trichotomy using a mitochondrial gene sequence. Proc. Natl. Acad. Sci. 88:1570-1574.

Honeycutt, R.L., M.W. Allard, S. V. Edwards, and D.A. Schlitter. 1991. Systematics and evolution of the Bathyergidae. Pp. 45-65 in The Biology of the Naked Mole-Rat (P.W. Sherman, J.U.M. Jarvis, and R. Alexander, eds.), Princeton Univ. Press.

Allard, M.W., and R.L. Honeycutt. 1991. Ribosomal DNA variation within and between species of rodents with emphasis on the genus Onychomys. Mol. Biol. Evol. 8:71-84.

Allard, M.W., D.L. Ellsworth, and R.L. Honeycutt. 1991. The production of single-stranded DNA suitable for sequencing using the polymerase chain reaction. Biotechniques 10:24-26. Reprinted as a book chapter 1992 in The P.C.R. Technique: DNA Sequencing. (J. Ellingboe and U. B. Gyllensten, eds.) Eaton Publishing, Natick, MA.

Allard, M.W., M.M. Miyamoto, and R.L. Honeycutt. 1991. Tests for rodent polyphyly. Nature 353:610-611.

Allard, M.W. 1990. Further comments on Goodman's maximum parsimony procedure. Cladistics 6(3):283-289.

Allard, M.W., and I.F. Greenbaum. 1988. Morphological variation and taxonomy of chromosomally differentiated Peromyscus from the Pacific Northwest. Canadian Journal of Zoology 66(12):2734-2739.

Allard, M.W., S.J. Gunn, and I.F. Greenbaum. 1987. Mensural discrimination of chromosomally characterized Peromyscus oreas and P. maniculatus. Journal of Mammalogy 68(2): 402-406.

For reprint requests, please send an email to mwallard@gwu.edu.